You are right about the difference in CF and manual colouring a cell. CF colouring isn't detected by VBA.
But CF uses a condition to colour cells, the same condition can be used to find those CF coloured cells again.
You said you would be happy with a bit of code; so try to work with this:
For Each cell In Range("G1:H10")
If cell = "Your CF condition here" Then cell.EntireRow.Delete
Let us know how this works out for you.